All Categories (1-17 of 17)

1. CompuCell3D - Avascular Tumor Growth and Mutation

   25 May 2023 | Contributor(s):: Juliano Ferrari Gianlupi

   Avascular tumor, growing on nutrient, self-limited, mutates

2. CompuCell3D - Simulation of cell crawling in 3D

   03 Feb 2022

   Deploys the CompuCell3D simulation of cell crawling in 3D by Fortuna et al. 2020 https://doi.org/10.1016/j.bpj.2020.04.024

3. Cancer Evolution in CompuCell3D

   27 May 2021 | Contributor(s):: Juliano Ferrari Gianlupi, James A Glazier

   Demonstrates implemetation of cancer evolution in CompuCell3D

4. Jul 27 2020

   CompuCell3D 15th User Training Workshop

   Goal:By the end of this two-week course, participants will have implemented a basic simulation of their particular biological problem of interest. Post-course support and collaboration will be...

   https://nanohub.org/events/details/1835

5. CompuCell3D v4 Main Tool

   Tools | 08 Jun 2020 | Contributor(s):: Juliano Ferrari Gianlupi, T.J. Sego

   Base tool for CompuCell3D version 4 and greater. Allows running any of the demos included with CC3D (/CompuCell3D_Demos/Demos)

6. CompuCell3D - 2D wet foam coarsening

   Tools | 04 Jun 2020

   Simulates foam coarsening in a 2D wet foam

7. CompuCell3D - 2D wet foam coarsening with drainage

   Tools | 04 Jun 2020

   Simulation of 2D wet foam with drainage (gravity)

8. CompuCell3D - Cells random walking at different speeds

   Tools | 04 Jun 2020 | Contributor(s):: Juliano Ferrari Gianlupi, T.J. Sego

   Cells random walking at different speeds implemented through the motility plugin

9. CompuCell3d cell sorting in a hexagonal lattice

   Tools | 04 Jun 2020 | Contributor(s):: Juliano Ferrari Gianlupi, T.J. Sego

   Showcases hexagonal lattice use in CompuCell3D by simulating cell sorting by difference in contact energies in a hexagonal lattice.

10. CompuCell3D - Delta-Notch signaling in a group of cells

    Tools | 04 Jun 2020 | Contributor(s):: Juliano Ferrari Gianlupi, T.J. Sego

    CompuCell3D can solve individual cell's ODE and have the information of one cell affect another (implemented trough SBML)

11. CompuCell3D v4 - Bacterium Macrophage simulation

    Tools | 04 Jun 2020 | Contributor(s):: Juliano Ferrari Gianlupi, T.J. Sego

    Macrophage hunts bacterium in a maze

12. CompuCell3D - Simulation of angiogenesis

    Tools | 04 Jun 2020 | Contributor(s):: Juliano Ferrari Gianlupi, T.J. Sego

    CompuCell3D simulates angiogenesis using chemical signals

13. Multiscale Multicellular Modeling of Tissue Function and Disease using CompuCell3D

    Online Presentations | 03 Jun 2020 | Contributor(s):: James A Glazier, Juliano Ferrari Gianlupi

    Multiscale multicellular models combine representations of subcellular biological networks, cell behaviors, tissue level effects and whole body effects to describe tissue outcomes during development, homeostasis and disease. I will briefly introduce these simulation methodologies, the CompuCell3D...

14. COVID 19 Virtual Tissue Model - Tissue Infection and Immune Response Dynamics

    Tools | 26 May 2020 | Contributor(s):: T.J. Sego, Josua Oscar Aponte-Serrano, Juliano Ferrari Gianlupi

    Simulates tissue and immune system interactions during a viral lung infection

15. CompuCell3D - Bacterium Macrophage

    Tools | 17 Apr 2019 | Contributor(s):: Juliano Ferrari Gianlupi, Somogyi, Andy T

    Simulation of macrophage chasing bacterium

16. (CC3D v3 - old) CompuCell3D Vascular Tumor

    Tools | 16 Apr 2019 | Contributor(s):: Juliano Ferrari Gianlupi, Somogyi, Andy T

    Simulate 3D vascular tumor with CompuCell3D

17. How do you use this tool?

    Q&A|Open | Responses: 1

    How do you use this tool?   Are there any instructions?

    https://nanohub.org/answers/question/2059